- Maša Roller Milošević (BSc thesis, 2009) "Analysis of metagenomes in extreme environments"
- Ozren Stojanović (BSc thesis, 2008) "Computational analysis of exonic splicing regulators"
- Morana Vitezić (BSc thesis, 2008) "Codon usage bias applied to molecular evolution"
- Tina Kokan (BSc thesis, 2007) "Computational analysis of the location of highly curved DNA regions in human genome"
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Tamara Milošević (BSc thesis, 2006) "Computational study of DNA recombinatinal repair
evolution"
- Marija Buljan (BSc thesis, 2006) "Horizontal gene transfer in metagenomes"
- Rosa Karlić (BSc thesis, 2006) "Computational classification of protein folds"
- Sonja Čubrilo (BSc thesis, 2006) "Analysis of DNA curvature in human genome"
- Nenad Bartoniček (BSc thesis, 2004) "MADNet - Microarray Database Network, Web server for analysis and interactive display of microarray experiments"
- Fran Supek (BSc thesis, 2004) "INCA -A computer program for codon usage analysis and its application to prokaryotic genomes"
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