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Over-represented localized sequence motifs in ribosomal protein gene promoters of basal metazoans.
Perina D, Korolija M, Roller M, Harcet M, Jeličić B, Mikoč A, Ćetković H. Genomics. 2011. 27(1):2747-2756.

PRO-MINE: A Bioinformatics Repository and Analytical Tool for TARDBP Mutations.
Pinto S, Vlahoviček K, Buratti E. Hum Mutat. 2010 Oct 28.

Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans.
Harcet M, Roller M, Ćetković H, Perina D, Wiens M, Müller WE, Vlahoviček K. Mol Biol Evol. 2010 Dec;27(12):2747-56. Epub 2010 Jul 9.

Translational selection is ubiquitous in prokaryotes.
Supek F, Skunca N, Repar J, Vlahovicek K, Smuc T. PLoS Genet. 2010 Jun 24;6(6):e1001004.

Common aberrations from the normal human plasma N-glycan profile.
Pucic M, Pinto S, Novokmet M, Knezevic A, Gornik O, Polasek O, Vlahovicek K, Wang W, Rudd PM, Wright AF, Campbell H, Rudan I, Lauc G. Glycobiology. 2010 Aug;20(8):970-5.

Histone modification levels are predictive for gene expression.
Karlić R, Chung HR, Lasserre J, Vlahoviček K, Vingron M. Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2926-31. Epub 2010 Feb 1

Prediction of protein-protein interaction sites in sequences and 3D structures by random forests.
Sikić M, Tomić S, Vlahoviček K. PLoS Comput Biol. 2009 Jan;5(1):e1000278. Epub 2009 Jan 30.

MADNet: microarray database network web server.
Šegota I, Bartoniček N, Vlahoviček K. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W332-5. Epub 2008 May 14.

PSAIA - protein structure and interaction analyzer.
Mihel J, Šikić M, Tomić S, Jeren B, Vlahoviček K. BMC Struct Biol. 2008 Apr 9;8:21.

Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity.
Supek F, Vlahoviček K. BMC Bioinformatics. 2005; 6: 182.

INCA: synonymous codon usage analysis and clustering by means of self-organizing map.
Supek F, Vlahoviček K. Bioinformatics. 2004 Sep 22;20(14):2329-30.

 

 

 

 

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